species:   Scscl
pid:       PID1656
parent:    Ssc-milR-132
paralog:   
locus:     NW_001820827.1:423780-423871
matures:   ['UGAUGAGGUAGAGCUUGAGGUU', 'ACACUUUGAUCUCUUUUGUGAUGA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820827.1:423780-423871

0 out of bounds
10 alignments
10 proper strand
10 stranded perfect matches

          **************************                      ************************          
CCUAAUUUGCACACACUUUGAUCUCUUUUGUGAUGAUGUUCCCUGGAAAGCAGAAACAUCUGAUGAGGUAGAGCUUGAGGUUGCCGAUUUCA
...((((.(((...(((((((.(((((((((.(.((((((..(((.....))).))))))).)))))..)))).)))))))))).))))...
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGGUU---------- l=22 a=2 c
------------ACACUUUGAUCUCUUUUGUGAUGA-------------------------------------------------------- l=24 a=0 c*
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGGUU---------- l=22 a=2 ma
------------ACACUUUGAUCUCUUUUGUGAUGA-------------------------------------------------------- l=24 a=0 ma*

------------------------------------------------------------UGAUGAGGUAGAGCUUGAG------------- l=19 a=1 
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGG------------ l=20 a=1 
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGGUU---------- l=22 a=2 (c,ma)
-------------------------------------------UGGAAAGCAGAAACAUCUGAUG--------------------------- l=22 a=2 
---------------------------------UGAUGUUCCCUGGAAAGCAGAAA------------------------------------ l=23 a=1 
----------------------------UGUGAUGAUGUUCCCUGGAAAG------------------------------------------ l=22 a=1 
---------------------------UUGUGAUGAUGUUCCCUGGAAAGC----------------------------------------- l=24 a=1 
--------------------------UUUGUGAUGAUGUUCCCUGGAAA------------------------------------------- l=23 a=1 

mb-00011
ax-1011011
ku-01
ss-111111111100
fn-111
